Stanford MicroArray Database

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Deletional tolerance mediated by extrathymic Aire-expressing cells. Deletional tolerance mediated by extrathymic Aire-expressing cells. Gardner JM, et al. (2008) Science 321(5890):843-7
Identification of candidate prostate cancer genes through comparative expression-profiling of seminal vesicle. Identification of candidate prostate cancer genes through comparative expression-profiling of seminal vesicle. Thompson M, et al. (2008) Prostate 68(11):1248-56
Identification of fevR, a novel regulator of virulence gene expression in Francisella novicida. Identification of fevR, a novel regulator of virulence gene expression in Francisella novicida. Brotcke A and Monack DM (2008) Infect Immun 76(8):3473-80
Genomic expression profiling of TNF-alpha-treated BDC2.5 diabetogenic CD4+ T cells. Genomic expression profiling of TNF-alpha-treated BDC2.5 diabetogenic CD4+ T cells. Lee LF, et al. (2008) Proc Natl Acad Sci U S A 105(29):10107-12
Comparative analysis of viral gene expression programs during poxvirus infection: a transcriptional map of the vaccinia and monkeypox genomes. Comparative analysis of viral gene expression programs during poxvirus infection: a transcriptional map of the vaccinia and monkeypox genomes. Rubins KH, et al. (2008) PLoS ONE 3(7):e2628
Combined analysis of murine and human microarrays and ChIP analysis reveals genes associated with the ability of MYC to maintain tumorigenesis. Combined analysis of murine and human microarrays and ChIP analysis reveals genes associated with the ability of MYC to maintain tumorigenesis. Wu CH, et al. (2008) PLoS Genet 4(6):e1000090
Genomic profiling identifies TITF1 as a lineage-specific oncogene amplified in lung cancer. Genomic profiling identifies TITF1 as a lineage-specific oncogene amplified in lung cancer. Kwei KA, et al. (2008) Oncogene 27(25):3635-40
Cell population heterogeneity in Mycobacterium tuberculosis H37R. Cell population heterogeneity in Mycobacterium tuberculosis H37R. Andreu N and Gibert I (2008) Tuberculosis (Edinb) ():

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We have installed new servers and other hardware. The new hardware should improve performance and increase availability. Please report any problems or anomalous behaviour.

Dozens of new data analysis tools are available from GenePattern . Registered users click on the 'GP' icon in their repository.
SMD Release 2.04
  • Expression Connection: from a publication data set the user is allowed to view and manipulate the cluster and the expression correlations. Currently only available for Tuberculosis and Streptomyces.
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  • SMD Access: Access to non-public data is limited to registered Stanford researchers and their collaborators. Please see SMD Registration for more specific information. If you have further questions regarding access, please e-mail the Stanford Microarray Database curators at array@genome.stanford.edu.
    Proprietary Data: Please note that some data in the database are proprietary and subject to legal restriction on their use, re-use and distribution. This includes but is not limited to Affymetrix and Agilent oligonucleotide sequences and patented sequences. It is the responsibility of the person viewing or downloading such data to ensure that such use does not infringe on the intellectual property rights of others.
    Project Funding: The National Cancer Institute at the US National Institutes of Health, the Howard Hughes Medical Institute, and the School of Medicine, Stanford University fund the Microarray Database. The database is a joint project in the Departments of Biochemistry and Genetics at the School of Medicine, Stanford University.

    Database Copyright © 2001-2008 The Board of Trustees of Leland Stanford Junior University. Permission to use the information contained in this database was given by the researchers/institutes who contributed or published the information. Users of the database are solely responsible for compliance with any copyright restrictions, including those applying to the author abstracts. Documents from this server are provided "AS-IS" without any warranty, expressed or implied.

    Please send comments or questions to: array@genome.stanford.edu